Repository Issue Activity (beta)

#350 A1 silently terminates when a response contains both execute and solution tags

#307 Golden Gate ds-fragment overhang bug + NN Tm / IUPAC primer-matching improvements (patch ready)

#313 Biomni web pro: commands occasionally hang indefinitely during scRNA-seq analysis (e.g., Repeat check for missing packages, List shared workspace root)

#334 setup.sh causes pip/conda package collision during installation

#310 Env var names in .env.example don't match what config.py actually reads (custom LLM provider unusable)

#324 Optional tool parameters are omitted from LangChain schemas and silently dropped

#331 Proposal: add a tested Folklore Clinical Variant Interpretation MCP example

#314 proposal: Add Agent-Devtools tracing hook for complex biomedical tool call chains

#311 Encountered an error while performing a one-click full environment installation using bash setup.sh.

#309 Proposal: Integrating MetaBench into Biomni's Benchmark Suite

#305 Request for correction: Biomni entry in OpenSciFlow AI-for-science workflow map

#257 R0 example stuck in loop

#302 [Feature] Research Knowledge Graph — persistent entity-relation memory across agent sessions

#255 Missing implementation of create_registration_visualization

#298 [Feature] Add support for Claude Code/CLI as Anthropic backend (alternative to API calls)

#295 Gradio port 7860

#135 Error testing add_mcp_server

#282 [Feature Request] Add a short "clinical assistant RAG & agent safety checklist" doc (docs only)

#202 integrate cellpose imaging model to the biomni

#285 Missing biomni.agent.base_agent

#267 Setup much faster than readme indicates?

#284 Claude sonnet 4.6 prefill error

#31 Add flow cytometry data from FlowRepository

#283 Setup.sh needed numpy and cython>=0.22 dependencies

#90 OpenRouter Integration