Repository Issue Activity (beta)

#680 dsDNA-protein input gives dissociated complex while ssDNA input works

#341 5746 tokens job: RESOURCE_EXHAUSTED (H100 80G, despite unified memory, jax flag and increase bucket size)

#576 OOM issues with 4608 and 5120 buckets

#689 How to install AF3 on a CentOS 7 HPC cluster with CUDA 12.4 or lower?

#202 Running on CUDA 12.2

#690 User ccd - creating enzyme transition state substrate

#687 Comparison of AlphaFold 2 and AlphaFold 3 databases

#688 GPU for AF3

#686 K-Lean: machine-verified Lean 4 contracts for structural biology — RMSD, contact probability, Boltzmann, sequence identity

#683 Resulting MSA

#684 AF3 server template option

#682 The weight application has not yet received a response and the question regarding ligand input

#681 Extracted paired MSAs from AF3 inferences

#671 Mapping file must be the same length as the template file.

#667 Inaccurate modelling of dihydrouridine RNA modifications

#675 Slow featurization when running inference for same input with multiple seeds

#609 AF3 runtime higher than reported for pool of proteins with 5000 tokens

#676 Discord

#501 Follow-up on AlphaFold 3 parameter request

#189 Bond order information missing in output cif files.

#666 How to turn off templates on AF3 server?

#650 O1 atom incorrectly dropped from non-linking saccharides/glycans

#673 New upload limits on alphafold server?

#206 Stopping Alphafold Prediction Script Once Desired Accuracy is Achieved

#672 Reproducibility of multi-seed runs: thoughts on pre-committing sampling protocols?