Repository Issue Activity (beta)

#720 Template not working

#236 RuntimeWarning: overflow encountered in reduce

#701 O-glycan glycosidic torsion geometry unconstrained — plans for α-O-GalNAc support?

#716 PTMs and termini of peptides

#717 [Question] Optimize `pair_transition_shard_spec` for VRAM sizes different than 40/80 GB

#715 `dm-haiku` version update

#681 Extracted paired MSAs from AF3 inferences

#432 Unified memory for extra large systems - rematerialization problems

#697 Resource exhausted OOM not solved with unified memory: illegal memory address

#609 AF3 runtime higher than reported for pool of proteins with 5000 tokens

#576 OOM issues with 4608 and 5120 buckets

#689 How to install AF3 on a CentOS 7 HPC cluster with CUDA 12.4 or lower?

#707 Atom-transformer sequence length is sized from a fixed 24 atoms/token, ~2.8x more than protein inputs use

#714 Internal input/output error

#492 Local AF3 and web server results do not agree

#708 Alvin Litana Mirasol alphafold3

#657 Question/Request: Apple Silicon support

#693 Issues when inference size is above 5000 tokens despite unified memory in v3.0.3

#698 AlphaFold 3 model parameters

#694 Determinism in AF3

#273 Null “NaN” case on return result when using cpu reasoning

#695 does AF3 minimize the energy , like AMBER, in the final predicted structure?

#690 User ccd - creating enzyme transition state substrate

#687 Comparison of AlphaFold 2 and AlphaFold 3 databases

#661 Document using user-provided CCDs for chain-internal non-canonical amino acids